Transferability of the coarse-grained potentials for trans-1,4-polybutadiene.
نویسندگان
چکیده
In this paper, we evaluate the transferability of the coarse-grained (CG) force field (FF) of trans-1,4-polybutadiene which was built via a combined structure-based and thermodynamic quantity-based CG method at 413 K and 1 atm by systematically examining CG simulated structural and thermodynamic properties against the underlying atomistic simulation results at different temperatures. Interestingly, the derived CG force field exhibits good "state-point transferability" to some extent. For example, when applying this CG FF to the nearby state point (e.g., amorphous phase at 500 K), the resulting local conformation statistics, chain size, and local packing properties as well as density values for the CG models closely match the atomistic simulated data. When further applying this CG force field to the crystalline state at 300 K, the structural and thermodynamic properties of the crystalline phase formed for these CG and atomistic MD simulations still match within a certain level of accuracy. Furthermore, the CG torsion potential has a dual effect: for the amorphous state, the presence of an intramolecular energy barrier against rotation improves the capability of CG models to more precisely reproduce the structural properties, while in the crystalline state this CG torsion barrier suppresses the formation of the more fully stretched chain with a higher trans content. As a result, in the crystalline phase the CG model chains without torsion potentials possess a more stretched chain conformation, pack more efficiently, and have a higher crystallinity degree than its counterpart with CG torsion potentials as well as its underlying atomistic model. However, the dual effect of CG torsion potentials does not mean that we have to use different dihedral parameters to describe different state points. Both CG FFs, one with and another without torsion potentials, are able to represent the melt and the crystalline states. Overall, the phase and its structural consistency between the CG and atomistic models over other state points (e.g., crystalline phase) for which CG FFs were not explicitly parameterized very encouraging such that the combined structure-based and thermodynamic quantity-based CG method can be used to derive an optimized CG FF for multi-scale simulation of polymer systems under different thermodynamic conditions.
منابع مشابه
Conditional reversible work method for molecular coarse graining applications.
Systematically coarse grained models for complex fluids usually lack chemical and thermodynamic transferability. Efforts to improve transferability require the development of effective potentials with unequivocal physical significance. In this paper, we introduce conditional reversible work (CRW) potentials that describe nonbonded interactions in coarse grained models at the pair level. The met...
متن کاملEvaluating the transferability of coarse-grained, density-dependent implicit solvent models to mixtures and chains.
Previously, we described a coarse-graining method for creating local density-dependent implicit solvent (DDIS) potentials that reproduce the radial distribution function (RDF) and solute excess chemical potential across a range of particle concentrations [E. C. Allen and G. C. Rutledge, J. Chem. Phys. 128, 154115 (2008)]. In this work, we test the transferability of these potentials, derived fr...
متن کاملRepresentability problems for coarse-grained water potentials.
The use of an effective intermolecular potential often involves a compromise between more accurate, complex functional forms and more tractable simple representations. To study this choice in detail, we systematically derive coarse-grained isotropic pair potentials that accurately reproduce the oxygen-oxygen radial distribution function of the TIP4P-Ew water model at state points over density r...
متن کاملImproving Internal Peptide Dynamics in the Coarse-Grained MARTINI Model: Toward Large-Scale Simulations of Amyloid- and Elastin-like Peptides
We present an extension of the coarse-grained MARTINI model for proteins and apply this extension to amyloid- and elastin-like peptides. Atomistic simulations of tetrapeptides, octapeptides, and longer peptides in solution are used as a reference to parametrize a set of pseudodihedral potentials that describe the internal flexibility of MARTINI peptides. We assess the performance of the resulti...
متن کاملCoarse-grained, density dependent implicit solvent model reliably reproduces behavior of a model surfactant system.
Density dependent, implicit solvent (DDIS) potentials, the generation of which has been described previously [E. C. Allen and G. C. Rutledge, J. Chem. Phys. 128, 154115 (2008); E. C. Allen and G. C. Rutledge, J. Chem. Phys. 130, 034904 (2009)], are used in this work to examine the self-assembly of a model surfactant system. While the measurement of thermodynamic properties in simulations of sol...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید
ثبت ناماگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید
ورودعنوان ژورنال:
- Physical chemistry chemical physics : PCCP
دوره 17 47 شماره
صفحات -
تاریخ انتشار 2015